Bioinformatics Research Group

Bioinformatics Research Group.
Research topics:
1. Bioinformatics (Omics analysis-based, MSA, high-throughput data)
2. Computational biology (Cellular-based Systems Biology, Network Biology, Mathematical for Cancer modeling)
3. Data-driven Artificial Intelligence in Computational Biology & Bioinformatics
4. Web-based/desktop and High-Performance Computing for Bioinformatics

This BRIN (MBKM) internship is focused on D4/S1 students who are familiar with Java/Python/R programming languages; data science/AI/ML/DL; graph theory; creating web/PHP/desktop-based information systems; using HPC/Linux; and bioinformatics & molecular modeling development tools.

Required majors/study programs according to research topics:
1. Bioinformatics & Computational Biology—Supervisor: Maulida Mazaya, Ph.D.
Study program: Computer science/informatics, bioinformatics/computational biology, mathematics biology/biology, biophysics/physical engineering/physics, chemical/chemical/pharmaceutical engineering 
Requirements: Java/Python/R, data science/AI, HPC/Linux 
Details of research activities 
A. Bioinformatics (Omics analysis-based, MSA, high-throughput data) 
a. Omics analysis in Precision Oncology 
b. Immunoinformatics for FMDV vaccine development 
c. Pipeline development for whole genome sequencing (WGS) and in silico vaccine 
B. Computational biology (Cellular-based Systems Biology, Network Biology, Mathematical for Cancer modeling) 
a. Cancer dynamics mechanisms through A Boolean network model (network science) 
b. Systems biology in herbal science for hypertension 
c. Data-driven & Artificial Intelligence in Computational Biology & Bioinformatics

2. Bioinformatics (Omics analysis-based)—Supervisor: apt. Wirawan Adikusuma, Ph.D.
Study programs: Pharmacy/chemical engineering/chemistry, Computer science/informatics, bioinformatics/computational biology, mathematical biology/biology, biophysics/engineering physics/physics
Requirements: Java/Python/R, data science/AI, HPC/Linux
Research activity details
A. Bioinformatics (Omics analysis-based, high-throughput data: Integration of Omics Data and Bioinformatics Analysis in Supporting Precision Therapy for Chronic Kidney Failure

3. Bioinformatics, Data-Driven, and High-Performance Computing—Supervisor: Dr. Achmad Fatchuttamam Abka, M.Kom.
Study programs: Computer science/informatics, bioinformatics/computational biology, mathematical biology/biology, biophysics/engineering physics/physics, chemical engineering/chemistry/pharmacy
Requirements: Java/Python/R, data science/AI, HPC/Linux
Research activity details
A. Developing Bioinformatics tools with AI technology and HPC
a. Developing chat applications for the genomic domain (LLM)
b. Developing Multiple Sequence Alignment applications (high-throughput data, HPC)

4. Bioinformatics, Data driven, and High-Performance Computing—Supervisor: Imam Civi Cartealy, MPhil.
Study programs: Computer science/informatics, bioinformatics/computational biology, mathematical biology/biology, biophysics/engineering physics/physics, chemical engineering/chemistry/pharmacy
Requirements: Java/Python/R, data science/AI, HPC/Linux
Research activity details
A. Omics data analysis—bioinformatics and bioinformatics pipeline development
a. Bioinformatics pipeline development for WGS data (development tools)
b. Bioinformatics data analysis (multi-omics analysis)

Location: BRIN KST Soekarno-Cibinong